Nextflow workflow report

[reverent_joliot]

Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (samplesheet.csv)'

Caused by:
  Process `NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (samplesheet.csv)` terminated with an error exit status (127)


Command executed:

  check_samplesheet.py \
      samplesheet.csv \
      samplesheet.valid.csv
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK":
      python: $(python --version | sed 's/Python //g')
  END_VERSIONS

Command exit status:
  127

Command output:
  (empty)

Command error:
  .command.run: line 332: docker: command not found

Work dir:
  /var/www-iscsi-data-1/www/lifesci/pub/penguin/~vcalvanese/viviensu/work/74/e34549de4f3eefc7f20e415aa215a9

Container:
  quay.io/biocontainers/python:3.8.3

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`

Run times

24-Jul-2025 11:59:41 - 24-Jul-2025 12:00:01 (duration: 19.5s)

  0 succeeded  

  0 cached  

  0 ignored  

  1 failed (0 retries)  

Nextflow command

nextflow run nf-core/chipseq -profile docker --input samplesheet.csv --genome hg19 --macs_gsize 2700000000 --read_length 100 --outdir results_chipseq

CPU-Hours

(a few seconds)

Launch directory

/var/www-iscsi-data-1/www/lifesci/pub/penguin/~vcalvanese/viviensu

Work directory

/var/www-iscsi-data-1/www/lifesci/pub/penguin/~vcalvanese/viviensu/work

Project directory

/home/mikkolalab/.nextflow/assets/nf-core/chipseq

Script name

main.nf

Script ID

23b304ebac3425a89ad32293fc2c277e

Workflow session

5758a83d-06a0-4e2d-ad43-615a083f8139

Workflow repository

https://github.com/nf-core/chipseq, revision master (commit hash 76e2382b6d443db4dc2396e6831d1243256d80b0)

Workflow profile

docker

Nextflow version

version 25.04.6, build 5954 (01-07-2025 11:27 UTC)