Nextflow workflow report

[deadly_knuth]

Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:INPUT_CHECK:SAMPLESHEET_CHECK'

Caused by:
  Failed to pull singularity image
    command: singularity pull  --name depot.galaxyproject.org-singularity-python-3.8.3.img.pulling.1753383408885 https://depot.galaxyproject.org/singularity/python:3.8.3 > /dev/null
    status : 127
    hint   : Try and increase singularity.pullTimeout in the config (current is "20m")
    message:
      bash: singularity: command not found

Run times

24-Jul-2025 11:56:30 - 24-Jul-2025 11:56:49 (duration: 18.5s)

  0 succeeded  

  0 cached  

  0 ignored  

  0 failed (0 retries)  

Nextflow command

nextflow run nf-core/chipseq -profile singularity --input samplesheet.csv --genome hg19 --macs_gsize 2700000000 --read_length 100 --outdir results_chipseq

CPU-Hours

(a few seconds)

Launch directory

/var/www-iscsi-data-1/www/lifesci/pub/penguin/~vcalvanese/viviensu

Work directory

/var/www-iscsi-data-1/www/lifesci/pub/penguin/~vcalvanese/viviensu/work

Project directory

/home/mikkolalab/.nextflow/assets/nf-core/chipseq

Script name

main.nf

Script ID

23b304ebac3425a89ad32293fc2c277e

Workflow session

388e4b4a-7d82-47d1-99d5-c2bbd9d5a495

Workflow repository

https://github.com/nf-core/chipseq, revision master (commit hash 76e2382b6d443db4dc2396e6831d1243256d80b0)

Workflow profile

singularity

Nextflow version

version 25.04.6, build 5954 (01-07-2025 11:27 UTC)