FastQCFastQC Report
Wed 2 Jan 2019
FUG_ne_4w_INPUT.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameFUG_ne_4w_INPUT.fastq
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences45751139
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTCGAACAATCTCGTAT1636090.3576063975150433TruSeq Adapter, Index 12 (97% over 37bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
.ATAAAA207.03616E-445.0000041
.TTTCCT207.03616E-445.0000041
.AACTCC207.03616E-445.0000041
.GATCGG453.8562575E-1045.0000041
.ATTTTT302.1673568E-645.0000041
.ATTTTA207.03616E-445.0000041
.CTGCCC207.03616E-445.0000041
.TGATAA253.8931863E-545.0000041
.CACCTG207.03616E-445.0000041
.CATTTT207.03616E-445.0000041
.CTTATT207.03616E-445.0000041
.TGTCTG207.03616E-445.0000041
.AAAATT207.03616E-445.0000041
.AAAAAA207.03616E-445.0000041
.TTTTCA207.03616E-445.0000041
.ATTCAA207.03616E-445.0000041
.TTATAT207.03616E-445.0000041
.AGATTT207.03616E-445.0000041
.TAAAAA207.03616E-445.0000041
.GTAGAG207.03616E-445.0000041